Integrate file exclusion with micromatch, refactor code

Utilized micromatch for file exclusion logic in MarkdownGenerator. Simplified constructor parameters and refactored `getTrackedFiles` for better readability. Updated dependencies and relevant scripts in package.json.

pnpm-lock.yaml

@@ -8,6 +8,9 @@ dependencies:
   llama3-tokenizer-js:
     specifier: ^1.0.0
     version: 1.2.0
+  micromatch:
+    specifier: ^4.0.8
+    version: 4.0.8
   node:
     specifier: '>=14.0.0'
     version: 22.11.0
@@ -174,6 +177,13 @@ packages:
       concat-map: 0.0.1
     dev: true
 
+  /braces@3.0.3:
+    resolution: {integrity: sha512-yQbXgO/OSZVD2IsiLlro+7Hf6Q18EJrKSEsdoMzKePKXct3gvD8oLcOQdIzGupr5Fj+EDe8gO/lxc1BzfMpxvA==}
+    engines: {node: '>=8'}
+    dependencies:
+      fill-range: 7.1.1
+    dev: false
+
   /callsites@3.1.0:
     resolution: {integrity: sha512-P8BjAsXvZS+VIDUI11hHCQEv74YT67YUi5JJFNWIqL235sBmjX4+qx9Muvls5ivyNENctx46xQLQ3aTuE7ssaQ==}
     engines: {node: '>=6'}
@@ -351,6 +361,13 @@ packages:
       flat-cache: 4.0.1
     dev: true
 
+  /fill-range@7.1.1:
+    resolution: {integrity: sha512-YsGpe3WHLK8ZYi4tWDg2Jy3ebRz2rXowDxnld4bkQB00cc/1Zw9AWnC0i9ztDJitivtQvaI9KaLyKrc+hBW0yg==}
+    engines: {node: '>=8'}
+    dependencies:
+      to-regex-range: 5.0.1
+    dev: false
+
   /find-up@5.0.0:
     resolution: {integrity: sha512-78/PXT1wlLLDgTzDs7sjq9hzz0vXD+zn+7wypEe4fXQxCmdmqfGsEPQxmiCSQI3ajFV91bVSsvNtrJRiW6nGng==}
     engines: {node: '>=10'}
@@ -423,6 +440,11 @@ packages:
       is-extglob: 2.1.1
     dev: true
 
+  /is-number@7.0.0:
+    resolution: {integrity: sha512-41Cifkg6e8TylSpdtTpeLVMqvSBEVzTttHvERD741+pnZ8ANv0004MRL43QKPDlK9cGvNp6NZWZUBlbGXYxxng==}
+    engines: {node: '>=0.12.0'}
+    dev: false
+
   /isexe@2.0.0:
     resolution: {integrity: sha512-RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw==}
     dev: true
@@ -475,6 +497,14 @@ packages:
     resolution: {integrity: sha512-0KpjqXRVvrYyCsX1swR/XTK0va6VQkQM6MNo7PqW77ByjAhoARA8EfrP1N4+KlKj8YS0ZUCtRT/YUuhyYDujIQ==}
     dev: true
 
+  /micromatch@4.0.8:
+    resolution: {integrity: sha512-PXwfBhYu0hBCPw8Dn0E+WDYb7af3dSLVWKi3HGv84IdF4TyFoC0ysxFd0Goxw7nSv4T/PzEJQxsYsEiFCKo2BA==}
+    engines: {node: '>=8.6'}
+    dependencies:
+      braces: 3.0.3
+      picomatch: 2.3.1
+    dev: false
+
   /minimatch@3.1.2:
     resolution: {integrity: sha512-J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw==}
     dependencies:
@@ -545,6 +575,11 @@ packages:
     engines: {node: '>=8'}
     dev: true
 
+  /picomatch@2.3.1:
+    resolution: {integrity: sha512-JU3teHTNjmE2VCGFzuY8EXzCDVwEqB2a8fsIvwaStHhAWJEeVd1o1QD80CU6+ZdEXXSLbSsuLwJjkCBWqRQUVA==}
+    engines: {node: '>=8.6'}
+    dev: false
+
   /prelude-ls@1.2.1:
     resolution: {integrity: sha512-vkcDPrRZo1QZLbn5RLGPpg/WmIQ65qoWWhcGKf/b5eplkkarX0m9z8ppCat4mlOqUsWpyNuYgO3VRyrYHSzX5g==}
     engines: {node: '>= 0.8.0'}
@@ -594,6 +629,13 @@ packages:
     resolution: {integrity: sha512-N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw==}
     dev: true
 
+  /to-regex-range@5.0.1:
+    resolution: {integrity: sha512-65P7iz6X5yEr1cwcgvQxbbIw7Uk3gOy5dIdtZ4rDveLqhrdJP+Li/Hx6tyK0NEb+2GCyneCMJiGqrADCSNk8sQ==}
+    engines: {node: '>=8.0'}
+    dependencies:
+      is-number: 7.0.0
+    dev: false
+
   /type-check@0.4.0:
     resolution: {integrity: sha512-XleUoc9uwGXqjWwXaUTZAmzMcFZ5858QA2vvx1Ur5xIcixXIP+8LnFDgRplU30us6teqdlskFfu+ae4K79Ooew==}
     engines: {node: '>= 0.8.0'}