Replaced Bun's `Glob` usage with the `glob` package in `MarkdownGenerator.ts` for better compatibility and functionality. Updated build entrypoints to include all TypeScript files and adjusted dependencies in `package.json` and `pnpm-lock.yaml` to accommodate this change. Also added type annotations to `fileExclusions` and `fileTypeExclusions` for improved type checking.
Added functionality to load and process nested `.code-tokenizer-md-ignore` files for excluding patterns during markdown generation. Introduced new dependencies and ensured initialization before file processing operations.
