Update build script to include logger.ts in build process

The build command now includes `logger.ts` to ensure it is bundled correctly. This change prevents potential runtime issues by explicitly compiling all necessary source files. Minor formatting was also applied in `cli.ts`.

src/cli.ts

@@ -10,6 +10,7 @@ import {
 import { WorkflowState } from './types';
 import log from './logger';
 
+
 async function demonstrateNestedManifold(): Promise<void> {
     log.info("Starting demonstration of nested manifold.");